Variant report

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11076577	1.00[AMR][1000 genomes]
rs16945398	1.00[AMR][1000 genomes]
rs16945402	1.00[AMR][1000 genomes]
rs16945483	1.00[AMR][1000 genomes]
rs1985323	1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs4324153	1.00[AMR][1000 genomes]
rs6500353	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs7200023	1.00[AMR][1000 genomes]
rs7204738	1.00[AMR][1000 genomes]
rs8049167	1.00[MEX][hapmap];1.00[MKK][hapmap]
rs8054041	1.00[AMR][1000 genomes]
rs8057350	1.00[AMR][1000 genomes]
rs8058843	1.00[AMR][1000 genomes]
rs8061091	1.00[AMR][1000 genomes]
rs8063586	1.00[AMR][1000 genomes]
rs9925020	1.00[AMR][1000 genomes]
rs9926879	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428657	chr16:47748036-47913816	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47755400-47765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:47762600-47766000	Weak transcription	HUVEC	blood vessel
3	chr16:47762600-47766400	Weak transcription	Stomach Mucosa	stomach
4	chr16:47763600-47769400	Enhancers	HMEC	breast
5	chr16:47764000-47766200	Weak transcription	Fetal Brain Male	brain
6	chr16:47764000-47767800	Enhancers	NHLF	lung
7	chr16:47764200-47766400	Enhancers	NHEK	skin
8	chr16:47764400-47767000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr16:47764600-47766400	Enhancers	Osteobl	bone
10	chr16:47764600-47768000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr16:47764800-47766400	Enhancers	NH-A	brain
12	chr16:47764800-47766600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr16:47764800-47767200	Enhancers	NHDF-Ad	bronchial
14	chr16:47764800-47767800	Enhancers	HSMM	muscle
15	chr16:47764800-47768200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr16:47765000-47765200	Enhancers	A549	lung
17	chr16:47765000-47767800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr16:47765000-47768000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr16:47765000-47768200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr16:47765000-47769200	Enhancers	HUES64 Cell Line	embryonic stem cell

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