Variant report

Variant	rs16946351
Chromosome Location	chr15:92625523-92625524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92396934..92399858-chr15:92625186..92627225,2	MCF-7	breast:
2	chr15:91846079..91846741-chr15:92625265..92626164,2	K562	blood:
3	chr15:92249653..92250271-chr15:92625240..92626013,2	MCF-7	breast:
4	chr15:92392649..92393225-chr15:92625326..92625925,2	MCF-7	breast:
5	chr15:92398900..92399766-chr15:92625069..92626058,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1040210	0.94[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1040211	0.82[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs12593677	0.88[CHB][hapmap];0.83[CHD][hapmap]
rs17519116	1.00[CEU][hapmap]
rs4984320	0.91[ASN][1000 genomes]
rs4984331	0.91[ASN][1000 genomes]
rs4984332	0.91[ASN][1000 genomes]
rs4984333	0.91[ASN][1000 genomes]
rs4984334	0.91[ASN][1000 genomes]
rs4984335	1.00[GIH][hapmap];0.83[JPT][hapmap];0.83[TSI][hapmap]
rs58679781	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:92614600-92626600	Weak transcription	Psoas Muscle	Psoas
3	chr15:92615000-92634200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:92619200-92630400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:92619200-92638000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:92619400-92638400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:92619800-92638000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:92620800-92635600	Weak transcription	Spleen	Spleen
9	chr15:92621000-92625600	Weak transcription	Liver	Liver
10	chr15:92621000-92638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:92621000-92638000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:92621000-92639200	Weak transcription	Lung	lung
13	chr15:92621400-92634200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr15:92621400-92638000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:92623400-92640600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:92623600-92626600	Enhancers	Fetal Heart	heart
17	chr15:92624800-92625800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr15:92624800-92626200	Enhancers	Fetal Brain Female	brain
19	chr15:92624800-92628800	Enhancers	Fetal Brain Male	brain
20	chr15:92625000-92625600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr15:92625000-92625600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:92625000-92625600	Enhancers	Brain Substantia Nigra	brain
23	chr15:92625000-92625600	Enhancers	Right Ventricle	heart
24	chr15:92625000-92626000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:92625000-92626000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:92625000-92626000	Enhancers	Brain Angular Gyrus	brain
27	chr15:92625000-92626000	Enhancers	Brain Anterior Caudate	brain
28	chr15:92625000-92626000	Enhancers	Brain Germinal Matrix	brain
29	chr15:92625000-92626000	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr15:92625000-92626200	Enhancers	Brain Cingulate Gyrus	brain
31	chr15:92625000-92626200	Enhancers	Brain Hippocampus Middle	brain
32	chr15:92625000-92626200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr15:92625000-92627200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:92625200-92625600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr15:92625200-92625600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:92625200-92625600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:92625200-92625600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr15:92625200-92625600	Enhancers	Rectal Smooth Muscle	rectum
39	chr15:92625200-92625600	Enhancers	Right Atrium	heart
40	chr15:92625200-92625800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr15:92625200-92625800	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr15:92625200-92625800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr15:92625200-92626000	Enhancers	Adipose Nuclei	Adipose
44	chr15:92625200-92626000	Enhancers	Colon Smooth Muscle	Colon
45	chr15:92625200-92626000	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr15:92625200-92626200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:92625200-92626200	Enhancers	Left Ventricle	heart
48	chr15:92625200-92626200	Enhancers	Ovary	ovary
49	chr15:92625200-92626800	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr15:92625200-92626800	Enhancers	Skeletal Muscle Male	skeletal muscle

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