Variant report

Variant	rs16947469
Chromosome Location	chr12:117773345-117773346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:117772433-117773469	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr12:117773204-117773371	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
NOS1	TF binding region

rs_ID	r²[population]
rs1001087	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12424669	0.82[JPT][hapmap]
rs12826020	1.00[JPT][hapmap]
rs1966118	0.96[ASN][1000 genomes]
rs3782217	0.89[ASN][1000 genomes]
rs9658264	0.82[JPT][hapmap]
rs9658265	0.82[JPT][hapmap]
rs9658266	0.82[JPT][hapmap]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117771200-117773400	Bivalent Enhancer	Adipose Nuclei	Adipose
2	chr12:117771200-117773400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
3	chr12:117771200-117773400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
4	chr12:117771200-117773600	Enhancers	Lung	lung
5	chr12:117771200-117773800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:117771400-117773600	Bivalent Enhancer	Fetal Stomach	stomach
7	chr12:117771400-117773600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr12:117771600-117776600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:117771600-117776600	Weak transcription	A549	lung
10	chr12:117771600-117789000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:117771800-117773400	Enhancers	Brain Anterior Caudate	brain
12	chr12:117771800-117776400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr12:117771800-117776600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr12:117772000-117773400	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr12:117772000-117776000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr12:117772200-117776600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr12:117772400-117774400	Enhancers	Psoas Muscle	Psoas
18	chr12:117772800-117773400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr12:117772800-117773600	Enhancers	NHEK	skin
20	chr12:117773000-117773400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr12:117773000-117773400	Bivalent Enhancer	Esophagus	oesophagus
22	chr12:117773000-117773400	Bivalent Enhancer	Fetal Brain Female	brain
23	chr12:117773000-117773600	Bivalent Enhancer	Fetal Lung	lung
24	chr12:117773000-117773600	Enhancers	Pancreas	Pancrea
25	chr12:117773000-117773600	Enhancers	Spleen	Spleen
26	chr12:117773200-117773400	Bivalent Enhancer	Liver	Liver
27	chr12:117773200-117773400	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
28	chr12:117773200-117773400	Bivalent Enhancer	Fetal Kidney	kidney
29	chr12:117773200-117773400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
30	chr12:117773200-117779800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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