Variant report

Variant	rs12826020
Chromosome Location	chr12:117793526-117793527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11068458	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11068459	0.97[ASN][1000 genomes]
rs12815584	1.00[CEU][hapmap]
rs12818970	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12826938	0.95[ASN][1000 genomes]
rs16947469	1.00[JPT][hapmap]
rs17617937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34054618	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401373	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35097914	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71469798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658258	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455724	chr12:117786105-117845806	Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv560385	chr12:117786105-117845806	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117782800-117796400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:117789400-117793600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:117789400-117793600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:117790000-117798000	Weak transcription	Psoas Muscle	Psoas
5	chr12:117792800-117794400	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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