Variant report

Variant	rs17617937
Chromosome Location	chr12:117781416-117781417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11068458	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11068459	0.85[ASN][1000 genomes]
rs12818970	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12826020	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12826938	0.84[ASN][1000 genomes]
rs34054618	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34401373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35097914	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71469798	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9658258	0.88[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117771600-117789000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117773600-117782600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr12:117777200-117785400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:117777400-117785400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:117779800-117783400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:117780000-117782600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr12:117780000-117783800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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