Variant report

Variant	rs12826938
Chromosome Location	chr12:117803157-117803158
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11068458	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11068459	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12818970	0.97[ASN][1000 genomes]
rs12826020	0.95[ASN][1000 genomes]
rs17617937	0.84[ASN][1000 genomes]
rs34054618	0.95[ASN][1000 genomes]
rs34401373	0.85[ASN][1000 genomes]
rs35097914	0.90[ASN][1000 genomes]
rs71469798	0.95[ASN][1000 genomes]
rs9658258	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455724	chr12:117786105-117845806	Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv560385	chr12:117786105-117845806	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117802600-117803200	Bivalent Enhancer	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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