Variant report

Variant	rs16950780
Chromosome Location	chr18:44817188-44817189
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12326579	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12605946	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12608016	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs12608025	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs16951539	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2082652	0.82[EUR][1000 genomes]
rs2082653	0.82[EUR][1000 genomes]
rs2684834	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2850691	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61645415	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7237929	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8094581	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9304346	0.82[CEU][hapmap]
rs9304347	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16950780	HDHD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44810400-44819200	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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