Variant report

Variant	rs16951539
Chromosome Location	chr18:44863914-44863915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12326579	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12605946	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12608016	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12608025	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16950780	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2082652	0.90[EUR][1000 genomes]
rs2082653	0.90[EUR][1000 genomes]
rs2684834	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2850691	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3892875	0.81[EUR][1000 genomes]
rs61645415	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7237929	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7239153	0.89[ASN][1000 genomes]
rs8094581	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9304346	1.00[CEU][hapmap]
rs9304347	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44863800-44864200	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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