Variant report

Variant	rs7239153
Chromosome Location	chr18:44870580-44870581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12456318	0.80[AFR][1000 genomes]
rs12605946	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs12608016	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs12608025	0.88[ASW][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs16951539	0.89[ASN][1000 genomes]
rs2850692	0.81[CEU][hapmap];0.85[TSI][hapmap]
rs60807056	0.80[ASN][1000 genomes]
rs61645415	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7237929	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs8094581	0.80[ASN][1000 genomes]
rs9304346	0.88[ASW][hapmap];0.86[YRI][hapmap]
rs9304347	0.83[LWK][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44868800-44870800	Enhancers	HSMM	muscle
2	chr18:44868800-44872000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr18:44869200-44872400	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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