Variant report

Variant	rs16952191
Chromosome Location	chr16:80078660-80078661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16952212	1.00[AMR][1000 genomes]
rs59338632	0.83[AMR][1000 genomes]
rs60031252	0.90[ASN][1000 genomes]
rs61496795	0.90[ASN][1000 genomes]
rs9925113	0.83[AMR][1000 genomes]
rs9935536	0.83[AMR][1000 genomes]
rs9937102	0.83[AMR][1000 genomes]
rs9938442	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9940653	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
2	chr16:80075000-80079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:80076000-80079600	Weak transcription	Fetal Intestine Large	intestine
4	chr16:80076400-80081200	Enhancers	Ovary	ovary
5	chr16:80078200-80079200	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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