Variant report

Variant	rs9940653
Chromosome Location	chr16:80076378-80076379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16952191	0.83[AMR][1000 genomes]
rs16952212	0.83[AMR][1000 genomes]
rs59338632	1.00[AMR][1000 genomes]
rs9925113	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9935536	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9937102	1.00[AMR][1000 genomes]
rs9938442	0.81[YRI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80072800-80085200	Weak transcription	Esophagus	oesophagus
2	chr16:80073200-80078000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:80074200-80076800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr16:80074400-80076400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:80075000-80079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:80075800-80077400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr16:80076000-80078200	Enhancers	Fetal Stomach	stomach
8	chr16:80076000-80079600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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