Variant report

Variant	rs16952932
Chromosome Location	chr15:44265873-44265874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44257377..44260472-chr15:44263670..44267581,4	K562	blood:
2	chr15:44257421..44260379-chr15:44264658..44267581,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10459588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11635948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12900880	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12910886	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1426658	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16958670	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16958691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1820482	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2252959	0.83[ASN][1000 genomes]
rs2615279	0.83[ASN][1000 genomes]
rs2696091	0.83[ASN][1000 genomes]
rs28375626	0.85[AMR][1000 genomes]
rs28479591	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28623028	0.85[AMR][1000 genomes]
rs28656778	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28832708	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2929282	1.00[JPT][hapmap]
rs2950619	0.83[ASN][1000 genomes]
rs4924728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57575746	0.92[AMR][1000 genomes]
rs58008065	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs58278421	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58541819	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58882193	0.83[ASN][1000 genomes]
rs60536495	0.92[AMR][1000 genomes]
rs61271143	1.00[AMR][1000 genomes]
rs6493094	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6493096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs6493098	0.83[ASN][1000 genomes]
rs7162529	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168522	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs7179696	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8029187	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes]
rs8029425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030125	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8035382	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs8035402	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs8041328	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
5	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44251000-44267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:44257400-44281000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:44259200-44285600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:44262400-44267800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:44262800-44267000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr15:44263000-44266400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:44263000-44266600	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:44263000-44267000	Weak transcription	Brain Angular Gyrus	brain
9	chr15:44263000-44295600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:44263200-44266600	Weak transcription	Brain Anterior Caudate	brain
11	chr15:44263200-44267200	Weak transcription	Brain Substantia Nigra	brain
12	chr15:44263400-44267000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr15:44265000-44267000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links