Variant report

Variant	rs7168522
Chromosome Location	chr15:44314337-44314338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10518994	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1160066	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11631340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11854312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11857696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12437804	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12591537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12900237	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13379739	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1365457	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1426657	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16948246	1.00[EUR][1000 genomes]
rs16951321	1.00[EUR][1000 genomes]
rs16951483	1.00[EUR][1000 genomes]
rs16951943	1.00[EUR][1000 genomes]
rs16952165	1.00[EUR][1000 genomes]
rs16952651	1.00[EUR][1000 genomes]
rs16952932	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs16958828	1.00[EUR][1000 genomes]
rs16959032	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs16959345	0.90[JPT][hapmap]
rs16964662	1.00[EUR][1000 genomes]
rs16965109	1.00[EUR][1000 genomes]
rs1808509	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1820485	0.81[ASN][1000 genomes]
rs1863600	0.87[ASN][1000 genomes]
rs2015277	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2042738	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2042739	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2042741	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2059628	0.81[ASN][1000 genomes]
rs2114420	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs2114421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2114422	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2412849	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2412850	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2412852	0.93[ASN][1000 genomes]
rs2412855	0.95[ASN][1000 genomes]
rs2555366	0.81[ASN][1000 genomes]
rs2555384	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2555385	0.81[ASN][1000 genomes]
rs2555387	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2615278	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2615279	0.82[MEX][hapmap]
rs2615280	0.81[ASN][1000 genomes]
rs2615281	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2615285	0.81[ASN][1000 genomes]
rs2615286	0.81[ASN][1000 genomes]
rs2615287	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2615288	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2615290	0.81[ASN][1000 genomes]
rs2615291	0.81[ASN][1000 genomes]
rs2615292	0.81[ASN][1000 genomes]
rs2615293	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2615295	0.81[ASN][1000 genomes]
rs2623019	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2696091	1.00[MEX][hapmap]
rs2696094	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2706472	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2706473	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2706474	0.81[ASN][1000 genomes]
rs2706481	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2706486	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2706488	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2706490	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2706492	0.81[ASN][1000 genomes]
rs2733203	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2733204	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2733208	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2733210	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2733226	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2957581	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2957583	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4419034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4597286	0.83[ASN][1000 genomes]
rs4924727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs58278421	0.85[AMR][1000 genomes]
rs58541819	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61271143	0.85[AMR][1000 genomes]
rs7162529	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs7166715	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7179696	0.85[AMR][1000 genomes]
rs8029187	1.00[MEX][hapmap]
rs8029425	0.85[AMR][1000 genomes]
rs8030125	0.85[AMR][1000 genomes]
rs8030309	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs8035212	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8035946	0.90[JPT][hapmap]
rs8038096	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8039970	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8041328	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs8042697	0.81[ASN][1000 genomes]
rs890465	0.89[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs958485	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
5	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44303000-44320400	Weak transcription	NH-A	brain
2	chr15:44308400-44319000	Weak transcription	Brain Hippocampus Middle	brain

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