Variant report

Variant	rs16952165
Chromosome Location	chr15:44258767-44258768
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10152845	1.00[EUR][1000 genomes]
rs16948246	1.00[EUR][1000 genomes]
rs16951321	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16951483	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16951943	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16952651	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16958828	1.00[EUR][1000 genomes]
rs16959032	1.00[EUR][1000 genomes]
rs16961830	1.00[EUR][1000 genomes]
rs16964662	1.00[EUR][1000 genomes]
rs16965109	1.00[EUR][1000 genomes]
rs2467416	1.00[EUR][1000 genomes]
rs2614830	1.00[EUR][1000 genomes]
rs28517525	1.00[EUR][1000 genomes]
rs58541819	1.00[EUR][1000 genomes]
rs7168522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037786	chr15:43888926-44318587	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv542370	chr15:43888926-44318587	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
5	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv977844	chr15:44251952-44264610	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44251000-44267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:44251600-44260400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:44251800-44259000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:44252000-44258800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:44252000-44260400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:44252000-44262000	Weak transcription	Fetal Brain Female	brain
7	chr15:44257400-44258800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:44257400-44261800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:44257400-44281000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:44258400-44263200	Enhancers	Brain Substantia Nigra	brain
11	chr15:44258600-44258800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:44258600-44259000	Enhancers	Brain Cingulate Gyrus	brain
13	chr15:44258600-44259200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:44258600-44259200	Enhancers	Brain Angular Gyrus	brain
15	chr15:44258600-44259400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:44258600-44263000	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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