Variant report

Variant	rs16958828
Chromosome Location	chr15:44327909-44327910
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44319347..44321533-chr15:44327467..44329133,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16948246	1.00[EUR][1000 genomes]
rs16951321	1.00[EUR][1000 genomes]
rs16951483	1.00[EUR][1000 genomes]
rs16951943	1.00[EUR][1000 genomes]
rs16952165	1.00[EUR][1000 genomes]
rs16952651	1.00[EUR][1000 genomes]
rs16959032	1.00[EUR][1000 genomes]
rs16959357	0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964662	1.00[EUR][1000 genomes]
rs16965109	1.00[EUR][1000 genomes]
rs58541819	1.00[EUR][1000 genomes]
rs7168522	1.00[EUR][1000 genomes]
rs7172717	1.00[AMR][1000 genomes]
rs7180583	1.00[AMR][1000 genomes]
rs8035946	1.00[AMR][1000 genomes]
rs8036490	1.00[AMR][1000 genomes]
rs8037399	1.00[AMR][1000 genomes]
rs8038605	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44322800-44330800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr15:44323000-44328400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:44323000-44330600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:44325800-44328400	Enhancers	HUVEC	blood vessel
5	chr15:44325800-44329000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:44326000-44328400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:44326000-44328400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:44326000-44328400	Enhancers	HSMM	muscle
9	chr15:44326000-44328400	Enhancers	NHDF-Ad	bronchial
10	chr15:44326000-44328600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:44326000-44328600	Enhancers	NH-A	brain
12	chr15:44326000-44328800	Enhancers	Osteobl	bone
13	chr15:44326200-44328400	Enhancers	HMEC	breast
14	chr15:44326200-44328400	Enhancers	HSMMtube	muscle
15	chr15:44326200-44328600	Enhancers	NHEK	skin
16	chr15:44326200-44329000	Enhancers	Brain Anterior Caudate	brain
17	chr15:44326400-44328400	Enhancers	Adipose Nuclei	Adipose
18	chr15:44326400-44328600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:44326400-44328800	Enhancers	Brain Hippocampus Middle	brain
20	chr15:44326400-44330800	Weak transcription	Hela-S3	cervix
21	chr15:44326600-44328400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:44326600-44328800	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:44326600-44328800	Enhancers	Brain Substantia Nigra	brain
24	chr15:44326600-44328800	Enhancers	NHLF	lung
25	chr15:44326800-44328000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr15:44326800-44328000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:44326800-44328600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr15:44327000-44328600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:44327000-44330800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:44327200-44329000	Enhancers	Brain Angular Gyrus	brain
31	chr15:44327400-44328600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:44327600-44330800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:44327600-44330800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:44327800-44328200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:44327800-44330600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:44327800-44330800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:44327800-44331000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links