Variant report

Variant	rs16959032
Chromosome Location	chr15:44359023-44359024
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44164617..44165127-chr15:44358542..44359181,2	K562	blood:
2	chr15:44358581..44359093-chr15:44794134..44794738,2	K562	blood:
3	chr15:44195719..44197034-chr15:44358046..44359172,5	MCF-7	breast:
4	chr15:44164366..44165030-chr15:44358513..44359129,2	MCF-7	breast:
5	chr15:44358212..44359040-chr15:44511974..44512476,2	MCF-7	breast:
6	chr15:44230968..44231953-chr15:44358174..44359095,4	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10518989	1.00[YRI][hapmap]
rs10518994	0.91[JPT][hapmap]
rs1160066	0.91[JPT][hapmap]
rs11631340	0.91[JPT][hapmap]
rs11854312	0.91[JPT][hapmap]
rs11857696	0.91[JPT][hapmap]
rs12437804	0.90[JPT][hapmap]
rs12591537	0.91[JPT][hapmap]
rs12900237	0.91[JPT][hapmap]
rs13379739	0.91[JPT][hapmap]
rs1365457	0.90[JPT][hapmap]
rs1426657	0.91[JPT][hapmap]
rs16948246	1.00[EUR][1000 genomes]
rs16951321	1.00[EUR][1000 genomes]
rs16951483	1.00[EUR][1000 genomes]
rs16951943	1.00[EUR][1000 genomes]
rs16952165	1.00[EUR][1000 genomes]
rs16952651	1.00[EUR][1000 genomes]
rs16958828	1.00[EUR][1000 genomes]
rs16959345	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1808509	0.90[JPT][hapmap]
rs2015277	0.91[JPT][hapmap]
rs2042738	0.91[JPT][hapmap]
rs2042739	0.91[JPT][hapmap]
rs2042741	0.91[JPT][hapmap]
rs2114420	1.00[JPT][hapmap]
rs2114421	0.90[JPT][hapmap]
rs2114422	0.91[JPT][hapmap]
rs2412849	0.91[JPT][hapmap]
rs2412850	0.91[JPT][hapmap]
rs2555384	0.91[JPT][hapmap]
rs2555387	0.91[JPT][hapmap]
rs2615278	0.90[JPT][hapmap]
rs2615281	1.00[JPT][hapmap]
rs2615287	0.91[JPT][hapmap]
rs2615288	0.91[JPT][hapmap]
rs2615293	0.91[JPT][hapmap]
rs2623019	0.91[JPT][hapmap]
rs2696094	0.90[JPT][hapmap]
rs2706472	0.91[JPT][hapmap]
rs2706473	0.91[JPT][hapmap]
rs2706481	0.91[JPT][hapmap]
rs2706486	0.90[JPT][hapmap]
rs2706488	0.90[JPT][hapmap]
rs2706490	0.91[JPT][hapmap]
rs2733203	0.90[JPT][hapmap]
rs2733204	0.90[JPT][hapmap]
rs2733208	0.90[JPT][hapmap]
rs2733210	0.91[JPT][hapmap]
rs2733226	0.91[JPT][hapmap]
rs2957581	0.90[JPT][hapmap]
rs2957583	0.91[JPT][hapmap]
rs4419034	0.91[JPT][hapmap]
rs4924727	0.90[JPT][hapmap]
rs58541819	1.00[EUR][1000 genomes]
rs7166715	0.90[JPT][hapmap]
rs7168522	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs7172717	0.95[ASN][1000 genomes]
rs8029735	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8030309	0.91[JPT][hapmap]
rs8035212	0.90[JPT][hapmap]
rs8035946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8038096	0.90[JPT][hapmap]
rs8039970	0.91[JPT][hapmap]
rs890465	0.90[JPT][hapmap]
rs958485	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3351630	chr15:44334624-44547841	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3331124	chr15:44340909-44367883	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44349200-44363000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:44352600-44362800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:44352800-44363400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:44353200-44360000	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:44353400-44361200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:44354000-44363000	Weak transcription	Fetal Heart	heart
7	chr15:44355400-44361200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:44358000-44359400	Enhancers	Brain Cingulate Gyrus	brain
9	chr15:44358200-44359200	Enhancers	HMEC	breast
10	chr15:44358200-44362800	Weak transcription	Brain Anterior Caudate	brain
11	chr15:44358400-44359200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:44358600-44359200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:44358600-44359200	Flanking Active TSS	Osteobl	bone
14	chr15:44358800-44359200	Active TSS	NHDF-Ad	bronchial
15	chr15:44358800-44360200	Weak transcription	Brain Substantia Nigra	brain
16	chr15:44359000-44359200	Enhancers	NH-A	brain
17	chr15:44359000-44365600	Weak transcription	NHEK	skin

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