Variant report

Variant	rs10518989
Chromosome Location	chr15:44383674-44383675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16959032	1.00[YRI][hapmap]
rs16959345	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16959357	1.00[EUR][1000 genomes]
rs2288296	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7164627	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7168355	1.00[AMR][1000 genomes]
rs7172041	1.00[EUR][1000 genomes]
rs8028120	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8029897	1.00[AMR][1000 genomes]
rs8030157	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs8035364	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3351630	chr15:44334624-44547841	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44373600-44392800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:44377200-44384000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:44379400-44397400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:44379800-44384200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:44380000-44384200	Weak transcription	HSMM	muscle
6	chr15:44380200-44384400	Weak transcription	Brain Angular Gyrus	brain
7	chr15:44380400-44384400	Weak transcription	NHLF	lung
8	chr15:44380600-44384200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:44380800-44384200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:44380800-44384400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:44380800-44387600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:44381000-44384200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:44381000-44384200	Weak transcription	NHDF-Ad	bronchial
14	chr15:44381000-44384400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:44381200-44384000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:44381200-44384000	Weak transcription	NH-A	brain
17	chr15:44381200-44384200	Weak transcription	NHEK	skin
18	chr15:44381200-44384200	Weak transcription	Osteobl	bone
19	chr15:44381200-44384400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:44381200-44384400	Weak transcription	A549	lung
21	chr15:44381200-44389000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:44381200-44394200	Weak transcription	HUVEC	blood vessel
23	chr15:44381600-44384000	Weak transcription	HMEC	breast
24	chr15:44381800-44384200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:44381800-44385000	Enhancers	Brain Substantia Nigra	brain
26	chr15:44381800-44400800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:44382000-44384600	Enhancers	Fetal Heart	heart
28	chr15:44382200-44384800	Enhancers	Brain Hippocampus Middle	brain
29	chr15:44382600-44384000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:44383000-44385000	Enhancers	Brain Anterior Caudate	brain
31	chr15:44383600-44384000	Weak transcription	HSMMtube	muscle
32	chr15:44383600-44387400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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