Variant report

Variant	rs16959345
Chromosome Location	chr15:44376108-44376109
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44346148..44347651-chr15:44376096..44377651,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10518989	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10518994	0.90[JPT][hapmap]
rs1160066	0.90[JPT][hapmap]
rs11631340	0.90[JPT][hapmap]
rs11854312	0.90[JPT][hapmap]
rs11857696	0.90[JPT][hapmap]
rs12437804	0.90[JPT][hapmap]
rs12591537	0.90[JPT][hapmap]
rs12900237	0.90[JPT][hapmap]
rs13379739	0.90[JPT][hapmap]
rs1365457	0.90[JPT][hapmap]
rs1426657	0.90[JPT][hapmap]
rs16959032	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16959357	1.00[EUR][1000 genomes]
rs1808509	0.90[JPT][hapmap]
rs2015277	0.90[JPT][hapmap]
rs2042738	0.90[JPT][hapmap]
rs2042739	0.90[JPT][hapmap]
rs2042741	0.90[JPT][hapmap]
rs2114420	1.00[JPT][hapmap]
rs2114421	0.90[JPT][hapmap]
rs2114422	0.90[JPT][hapmap]
rs2412849	0.90[JPT][hapmap]
rs2412850	0.90[JPT][hapmap]
rs2555384	0.90[JPT][hapmap]
rs2555387	0.90[JPT][hapmap]
rs2615278	0.90[JPT][hapmap]
rs2615281	1.00[JPT][hapmap]
rs2615287	0.90[JPT][hapmap]
rs2615288	0.90[JPT][hapmap]
rs2615293	0.90[JPT][hapmap]
rs2623019	0.90[JPT][hapmap]
rs2696094	0.90[JPT][hapmap]
rs2706472	0.90[JPT][hapmap]
rs2706473	0.90[JPT][hapmap]
rs2706481	0.90[JPT][hapmap]
rs2706486	0.90[JPT][hapmap]
rs2706488	0.90[JPT][hapmap]
rs2706490	0.90[JPT][hapmap]
rs2733203	0.90[JPT][hapmap]
rs2733204	0.90[JPT][hapmap]
rs2733208	0.90[JPT][hapmap]
rs2733210	0.90[JPT][hapmap]
rs2733226	0.90[JPT][hapmap]
rs2957581	0.90[JPT][hapmap]
rs2957583	0.90[JPT][hapmap]
rs4419034	0.90[JPT][hapmap]
rs4924727	0.90[JPT][hapmap]
rs7166715	0.90[JPT][hapmap]
rs7168522	0.90[JPT][hapmap]
rs7172041	1.00[EUR][1000 genomes]
rs7172717	0.91[ASN][1000 genomes]
rs8029735	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8030309	0.90[JPT][hapmap]
rs8035212	0.90[JPT][hapmap]
rs8035946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8038096	0.90[JPT][hapmap]
rs8039970	0.90[JPT][hapmap]
rs890465	0.90[JPT][hapmap]
rs958485	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1044435	chr15:44176103-44507403	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1045362	chr15:44280481-44414443	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv832989	chr15:44306469-44461710	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3351630	chr15:44334624-44547841	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3364317	chr15:44367781-44382890	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44371800-44376200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:44372600-44377800	Enhancers	Osteobl	bone
3	chr15:44372800-44376200	Enhancers	Brain Anterior Caudate	brain
4	chr15:44372800-44378000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:44373000-44377800	Enhancers	NH-A	brain
6	chr15:44373200-44377200	Enhancers	Brain Substantia Nigra	brain
7	chr15:44373600-44377400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:44373600-44392800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:44374000-44377200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr15:44374200-44379400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:44374200-44379600	Weak transcription	HSMM	muscle
12	chr15:44374400-44377800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:44375000-44377400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:44375000-44377600	Enhancers	HMEC	breast
15	chr15:44375000-44379600	Weak transcription	NHLF	lung
16	chr15:44375200-44376600	Weak transcription	Hela-S3	cervix
17	chr15:44375200-44376800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr15:44375200-44377000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:44375200-44378800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:44375400-44376400	Weak transcription	Brain Angular Gyrus	brain
21	chr15:44375400-44376400	Weak transcription	NHEK	skin
22	chr15:44375400-44378000	Enhancers	HUVEC	blood vessel
23	chr15:44375600-44376200	Enhancers	GM12878-XiMat	blood
24	chr15:44375600-44376800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:44375800-44376200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:44375800-44381000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:44376000-44377800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:44376000-44379000	Weak transcription	Brain Hippocampus Middle	brain

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