Variant report

Variant	rs16953361
Chromosome Location	chr17:46251662-46251663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46240659..46244208-chr17:46251439..46255142,4	MCF-7	breast:
2	chr17:46228679..46233044-chr17:46249536..46252436,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16953055	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs16953800	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs16953909	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs16953910	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs16954469	0.89[YRI][hapmap]
rs16955049	0.90[YRI][hapmap]
rs16955553	0.90[YRI][hapmap]
rs16955819	0.90[YRI][hapmap]
rs17620866	1.00[YRI][hapmap]
rs17694404	1.00[YRI][hapmap]
rs2875747	0.88[YRI][hapmap]
rs4793760	0.81[AFR][1000 genomes]
rs4794402	1.00[YRI][hapmap]
rs7208490	1.00[YRI][hapmap]
rs7223389	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs8076309	0.88[YRI][hapmap]
rs8077950	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9747665	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46239200-46253800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46241000-46253200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr17:46245000-46252200	Weak transcription	GM12878-XiMat	blood
4	chr17:46247000-46258600	Weak transcription	Primary B cells from cord blood	blood
5	chr17:46247400-46253000	Weak transcription	Thymus	Thymus
6	chr17:46247800-46254400	Weak transcription	Fetal Thymus	thymus
7	chr17:46248000-46253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr17:46248200-46253000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr17:46250000-46253000	Enhancers	HSMM	muscle
10	chr17:46250200-46251800	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr17:46250200-46252600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
12	chr17:46250200-46253000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:46250200-46255200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:46250400-46251800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:46250400-46251800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr17:46250400-46251800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr17:46250400-46252800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr17:46250600-46252400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr17:46250800-46251800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr17:46250800-46251800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr17:46250800-46252000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr17:46251000-46257400	Enhancers	HSMMtube	muscle
23	chr17:46251200-46253600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr17:46251200-46254400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr17:46251200-46267200	Strong transcription	Primary T cells from cord blood	blood
26	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr17:46251400-46252000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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