Variant report

Variant	rs8077950
Chromosome Location	chr17:46255670-46255671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16953055	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953361	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16953800	0.83[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953909	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953910	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16954469	0.87[YRI][hapmap]
rs16955049	0.88[YRI][hapmap]
rs16955553	0.88[YRI][hapmap]
rs16955819	0.88[YRI][hapmap]
rs17620866	1.00[YRI][hapmap]
rs17694404	1.00[YRI][hapmap]
rs2036763	0.88[YRI][hapmap]
rs2875747	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs4793760	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4794402	1.00[YRI][hapmap]
rs7208490	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7223389	0.83[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8076309	0.88[YRI][hapmap]
rs9747665	0.83[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46247000-46258600	Weak transcription	Primary B cells from cord blood	blood
2	chr17:46251000-46257400	Enhancers	HSMMtube	muscle
3	chr17:46251200-46267200	Strong transcription	Primary T cells from cord blood	blood
4	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr17:46251800-46256000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:46251800-46267400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr17:46252000-46271400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr17:46252600-46257000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:46252600-46271000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr17:46252800-46260200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:46253000-46257600	Strong transcription	Thymus	Thymus
12	chr17:46253000-46260200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr17:46253200-46270800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:46253400-46257400	Enhancers	HSMM	muscle
15	chr17:46253400-46260800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr17:46253600-46259400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:46253600-46267000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
18	chr17:46253800-46256000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr17:46253800-46256600	Strong transcription	GM12878-XiMat	blood
20	chr17:46253800-46266800	Strong transcription	Primary B cells from peripheral blood	blood
21	chr17:46254000-46271000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr17:46254200-46255800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
23	chr17:46254400-46260400	Strong transcription	Fetal Thymus	thymus
24	chr17:46254400-46266800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr17:46255000-46270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr17:46255200-46256800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr17:46255200-46270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr17:46255400-46256000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr17:46255600-46255800	Enhancers	Fetal Muscle Leg	muscle
30	chr17:46255600-46256000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr17:46255600-46256400	Enhancers	H1 Cell Line	embryonic stem cell
32	chr17:46255600-46256400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr17:46255600-46256600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr17:46255600-46256800	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr17:46255600-46257000	Enhancers	HUES64 Cell Line	embryonic stem cell

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