Variant report

Variant	rs2036763
Chromosome Location	chr17:46452479-46452480
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46428950..46429653-chr17:46451696..46452878,4	MCF-7	breast:
2	chr17:46385263..46385818-chr17:46451757..46452701,2	K562	blood:
3	chr17:46292744..46293326-chr17:46451926..46452607,2	MCF-7	breast:
4	chr17:46450687..46453048-chr17:46465448..46467594,2	K562	blood:
5	chr17:46451696..46452557-chr20:45824803..45825404,2	MCF-7	breast:
6	chr17:46444552..46447164-chr17:46450394..46452705,2	K562	blood:
7	chr17:46407872..46408450-chr17:46451694..46452565,2	K562	blood:
8	chr17:46429020..46429829-chr17:46451521..46452721,3	MCF-7	breast:
9	chr17:46287495..46289753-chr17:46452282..46454709,2	K562	blood:
10	chr17:46412994..46413498-chr17:46451945..46452703,2	K562	blood:
11	chr17:46451915..46452630-chr17:46662498..46663096,2	MCF-7	breast:
12	chr17:46428884..46429400-chr17:46452097..46452707,2	K562	blood:

No data

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16953800	0.88[YRI][hapmap]
rs16953909	0.87[YRI][hapmap]
rs16953910	0.87[YRI][hapmap]
rs16954469	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs16955049	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16955553	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16955819	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17620866	0.88[YRI][hapmap]
rs17694404	0.88[YRI][hapmap]
rs4794553	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4794557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4794680	1.00[AMR][1000 genomes]
rs7212462	1.00[AMR][1000 genomes]
rs7215991	1.00[AMR][1000 genomes]
rs7218892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8067019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8076309	1.00[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8077950	0.88[YRI][hapmap]
rs8078964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8080205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2036763	FAM118A	trans	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46423600-46453800	Weak transcription	Fetal Thymus	thymus
2	chr17:46438400-46471800	Weak transcription	Thymus	Thymus
3	chr17:46445800-46453000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46450400-46454800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
5	chr17:46450800-46462000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:46451000-46453200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:46451000-46453200	Weak transcription	K562	blood
8	chr17:46451800-46454000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:46452000-46452600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr17:46452000-46453000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr17:46452000-46453400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr17:46452000-46454400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:46452000-46454400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46452200-46452800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:46452200-46453400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr17:46452200-46455400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr17:46452200-46463800	Weak transcription	Primary B cells from cord blood	blood
18	chr17:46452400-46453400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr17:46452400-46454800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr17:46452400-46454800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr17:46452400-46456000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr17:46452400-46459600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr17:46452400-46460200	Weak transcription	GM12878-XiMat	blood
24	chr17:46452400-46463200	Strong transcription	Primary T cells from cord blood	blood

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