Variant report

Variant	rs8078964
Chromosome Location	chr17:46361048-46361049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46355099..46358065-chr17:46360042..46362532,3	MCF-7	breast:
2	chr17:46296129..46298208-chr17:46360954..46363694,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16954469	0.94[AFR][1000 genomes]
rs16955049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16955553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16955819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4794553	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4794557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4794680	1.00[AMR][1000 genomes]
rs7212462	1.00[AMR][1000 genomes]
rs7215991	1.00[AMR][1000 genomes]
rs7218892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8067019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8076309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8080205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:46356400-46362000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr17:46356600-46370000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr17:46356600-46370800	Weak transcription	GM12878-XiMat	blood
9	chr17:46357000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:46357000-46371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:46357400-46361400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr17:46357400-46371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:46357600-46371400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr17:46358200-46371000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr17:46360000-46361400	Enhancers	A549	lung
16	chr17:46360600-46361400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr17:46360600-46361400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr17:46360800-46361200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr17:46360800-46361400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr17:46360800-46361400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr17:46360800-46361600	Enhancers	Psoas Muscle	Psoas
22	chr17:46360800-46361600	Enhancers	Stomach Mucosa	stomach
23	chr17:46361000-46361400	Enhancers	Fetal Lung	lung
24	chr17:46361000-46361400	Enhancers	K562	blood
25	chr17:46361000-46361600	Strong transcription	Primary T cells from cord blood	blood
26	chr17:46361000-46361600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr17:46361000-46363200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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