Variant report

Variant	rs4794553
Chromosome Location	chr17:46333729-46333730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46331179..46335442-chr17:46341781..46344659,3	K562	blood:
2	chr17:46297134..46298953-chr17:46333479..46335931,2	K562	blood:
3	chr17:46326654..46330395-chr17:46331839..46334091,3	MCF-7	breast:
4	chr17:46332048..46334282-chr17:46786525..46788782,2	K562	blood:
5	chr17:46312503..46315307-chr17:46333530..46335778,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16954469	0.83[AFR][1000 genomes]
rs16955049	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16955553	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16955819	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036763	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4794557	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4794680	1.00[AMR][1000 genomes]
rs7212462	1.00[AMR][1000 genomes]
rs7215991	1.00[AMR][1000 genomes]
rs7218892	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8067019	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8076309	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8078964	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8080205	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
2	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:46324800-46337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:46326200-46335600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46329000-46337000	Weak transcription	HUVEC	blood vessel
14	chr17:46329600-46335400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:46331000-46335000	Weak transcription	Primary T cells from cord blood	blood
16	chr17:46331600-46335600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:46331800-46334200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr17:46332600-46335400	Weak transcription	K562	blood
19	chr17:46332600-46337000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr17:46332600-46337000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr17:46332600-46337000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr17:46333200-46338600	Enhancers	A549	lung
23	chr17:46333400-46336200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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