Variant report

Variant	rs16953618
Chromosome Location	chr16:80617057-80617058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11861858	0.87[AFR][1000 genomes]
rs11866226	0.87[AFR][1000 genomes]
rs16953637	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80612200-80618600	Weak transcription	Small Intestine	intestine
2	chr16:80614800-80617200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr16:80614800-80617200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:80614800-80617200	Weak transcription	NH-A	brain
5	chr16:80614800-80617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr16:80615400-80617400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr16:80615600-80619800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr16:80615800-80617200	Weak transcription	GM12878-XiMat	blood
9	chr16:80615800-80617600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr16:80615800-80619600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr16:80615800-80624800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr16:80616000-80617400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr16:80616200-80619800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr16:80616600-80619800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr16:80617000-80617400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr16:80617000-80618000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr16:80617000-80618000	Enhancers	NHDF-Ad	bronchial
18	chr16:80617000-80618200	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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