Variant report

Variant	rs11866226
Chromosome Location	chr16:80620101-80620102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11861858	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1470822	1.00[ASN][1000 genomes]
rs16953618	0.87[AFR][1000 genomes]
rs16953628	1.00[ASN][1000 genomes]
rs16953631	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16953637	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16953639	1.00[ASN][1000 genomes]
rs16953641	1.00[ASN][1000 genomes]
rs2167669	1.00[ASN][1000 genomes]
rs6564766	1.00[ASN][1000 genomes]
rs6564767	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7186246	1.00[ASN][1000 genomes]
rs74028312	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80615800-80624800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:80617200-80620800	Enhancers	GM12878-XiMat	blood
3	chr16:80618000-80620600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr16:80619200-80632600	Weak transcription	Hela-S3	cervix
5	chr16:80619800-80620400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr16:80619800-80620400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr16:80619800-80620600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr16:80619800-80621200	Enhancers	Placenta	Placenta
9	chr16:80620000-80620400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
10	chr16:80620000-80620600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:80620000-80624800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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