Variant report

Variant	rs6564767
Chromosome Location	chr16:80635728-80635729
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDYL2-1	chr16:80631803-80636416	ENSG00000261128.1

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1109548	1.00[JPT][hapmap]
rs11861858	1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11866226	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13330810	1.00[JPT][hapmap]
rs13334543	1.00[JPT][hapmap]
rs13334600	1.00[JPT][hapmap]
rs1470822	1.00[ASN][1000 genomes]
rs16953628	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16953631	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16953637	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16953639	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953641	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953658	1.00[JPT][hapmap]
rs2167669	1.00[ASN][1000 genomes]
rs2167672	1.00[JPT][hapmap]
rs6564766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198464	1.00[JPT][hapmap]
rs72487971	1.00[EUR][1000 genomes]
rs74028312	1.00[ASN][1000 genomes]
rs8045496	1.00[JPT][hapmap]
rs896624	1.00[JPT][hapmap]
rs966671	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80625400-80645600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:80625600-80636000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr16:80625600-80637800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:80626000-80639800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr16:80626200-80637800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr16:80626200-80640000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr16:80626200-80640000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr16:80626400-80636800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr16:80626600-80636600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr16:80626600-80637800	Weak transcription	Liver	Liver
11	chr16:80626800-80645800	Weak transcription	Right Ventricle	heart
12	chr16:80628600-80636400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr16:80629200-80647600	Weak transcription	NHEK	skin
14	chr16:80630600-80668000	Weak transcription	Fetal Kidney	kidney
15	chr16:80631000-80638000	Weak transcription	Gastric	stomach
16	chr16:80631000-80641400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr16:80631200-80635800	Weak transcription	Fetal Intestine Large	intestine
18	chr16:80631400-80638000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr16:80632000-80637400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr16:80633800-80636000	Weak transcription	Hela-S3	cervix
21	chr16:80633800-80636200	Weak transcription	Aorta	Aorta
22	chr16:80633800-80636200	Weak transcription	Lung	lung
23	chr16:80633800-80636200	Weak transcription	HSMM	muscle
24	chr16:80633800-80640800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr16:80633800-80645200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr16:80634000-80636000	Weak transcription	Fetal Intestine Small	intestine
27	chr16:80634000-80636200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr16:80634000-80636200	Weak transcription	NHDF-Ad	bronchial
29	chr16:80634000-80636400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr16:80634000-80647800	Weak transcription	NHLF	lung
31	chr16:80634200-80640800	Weak transcription	Adipose Nuclei	Adipose
32	chr16:80634200-80663600	Weak transcription	Brain Anterior Caudate	brain
33	chr16:80634400-80636600	Weak transcription	HUVEC	blood vessel
34	chr16:80634400-80640200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr16:80634400-80641000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr16:80634600-80641000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr16:80634800-80637800	Weak transcription	Spleen	Spleen
38	chr16:80634800-80645600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr16:80635000-80640000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr16:80635000-80651200	Weak transcription	Brain Hippocampus Middle	brain
41	chr16:80635200-80637200	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr16:80635200-80637800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr16:80635200-80639000	Strong transcription	Placenta	Placenta
44	chr16:80635400-80637800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr16:80635400-80655600	Weak transcription	Brain Angular Gyrus	brain

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