Variant report

Variant	rs8045496
Chromosome Location	chr16:80563762-80563763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80561442..80564402-chr16:80573429..80575868,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259867	Chromatin interaction
ENSG00000168589	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10871389	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10871390	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs1109548	1.00[JPT][hapmap]
rs11150295	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs11644215	1.00[CHB][hapmap]
rs11649558	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs11861858	1.00[JPT][hapmap]
rs11863816	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11866588	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11866734	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11866994	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs12051207	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12102506	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12443848	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs12444563	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs12444723	1.00[CHB][hapmap]
rs12445674	0.84[EUR][1000 genomes]
rs12597089	0.84[EUR][1000 genomes]
rs12597602	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs12598311	0.85[EUR][1000 genomes]
rs12934612	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs13330810	1.00[JPT][hapmap]
rs13334543	1.00[JPT][hapmap]
rs13334600	1.00[JPT][hapmap]
rs16953628	1.00[JPT][hapmap]
rs16953639	1.00[JPT][hapmap]
rs16953641	1.00[JPT][hapmap]
rs16953658	1.00[JPT][hapmap]
rs2167672	1.00[JPT][hapmap]
rs28448585	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28531767	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28542735	0.84[EUR][1000 genomes]
rs28581872	0.81[EUR][1000 genomes]
rs28583998	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28589320	0.84[EUR][1000 genomes]
rs28657821	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28658033	0.81[EUR][1000 genomes]
rs28668848	0.82[EUR][1000 genomes]
rs28683132	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28759267	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4280255	0.90[CEU][hapmap]
rs4427819	0.85[CEU][hapmap]
rs4458005	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4517810	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4533296	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4541087	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4567728	0.85[EUR][1000 genomes]
rs4622526	0.85[EUR][1000 genomes]
rs4889160	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs6564762	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs6564763	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs7187807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7190759	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs7198464	1.00[JPT][hapmap]
rs8182107	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs896624	1.00[JPT][hapmap]
rs966669	0.90[ASN][1000 genomes]
rs966671	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9931700	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9932143	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9933884	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9937217	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9972743	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9972747	0.83[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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