Variant report

Variant	rs966669
Chromosome Location	chr16:80601126-80601127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11644889	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11649558	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11866835	0.93[AMR][1000 genomes]
rs13335321	0.89[EUR][1000 genomes]
rs28581872	0.81[AFR][1000 genomes]
rs28668848	0.81[AFR][1000 genomes]
rs4302045	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4334316	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4534859	0.82[EUR][1000 genomes]
rs59416398	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7204803	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8045496	0.90[ASN][1000 genomes]
rs8063211	0.84[AMR][1000 genomes]
rs966670	0.91[EUR][1000 genomes]
rs966671	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9930879	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9935465	0.82[EUR][1000 genomes]
rs9937215	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80598400-80602000	Weak transcription	Fetal Intestine Small	intestine
2	chr16:80598400-80603000	Weak transcription	Small Intestine	intestine
3	chr16:80598800-80602800	Weak transcription	Fetal Intestine Large	intestine
4	chr16:80599000-80602800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr16:80599000-80602800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr16:80599000-80602800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr16:80599000-80602800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr16:80599000-80603000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr16:80599000-80603200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr16:80599000-80603400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr16:80599000-80603400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr16:80599000-80607800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr16:80599200-80602800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr16:80599200-80603000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr16:80599200-80603000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr16:80599200-80603000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr16:80599200-80603200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr16:80600200-80603400	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links