Variant report

Variant	rs59416398
Chromosome Location	chr16:80598384-80598385
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80595839..80600096-chr16:80600224..80603898,5	MCF-7	breast:
2	chr16:80593676..80596340-chr16:80598060..80599713,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260737	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11644889	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11649558	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11863816	1.00[ASN][1000 genomes]
rs11866588	1.00[ASN][1000 genomes]
rs11866734	1.00[ASN][1000 genomes]
rs12051207	1.00[ASN][1000 genomes]
rs12102506	1.00[ASN][1000 genomes]
rs28448585	1.00[ASN][1000 genomes]
rs28531767	1.00[ASN][1000 genomes]
rs28581872	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28583998	1.00[ASN][1000 genomes]
rs28657821	1.00[ASN][1000 genomes]
rs28658033	0.81[AFR][1000 genomes]
rs28668848	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28683132	1.00[ASN][1000 genomes]
rs28759267	1.00[ASN][1000 genomes]
rs4302045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4316772	0.87[EUR][1000 genomes]
rs4334316	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4517810	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7187807	0.87[ASN][1000 genomes]
rs73574279	0.87[ASN][1000 genomes]
rs966669	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs966671	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9929079	1.00[ASN][1000 genomes]
rs9930879	0.83[AMR][1000 genomes]
rs9931700	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9932143	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9933884	1.00[ASN][1000 genomes]
rs9937215	0.82[AMR][1000 genomes]
rs9937217	1.00[ASN][1000 genomes]
rs9940164	0.87[ASN][1000 genomes]
rs9972743	0.87[ASN][1000 genomes]
rs9972747	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80597000-80598400	Enhancers	Fetal Intestine Small	intestine
2	chr16:80597000-80598800	Enhancers	Fetal Intestine Large	intestine
3	chr16:80597600-80599000	Enhancers	Primary hematopoietic stem cells	blood
4	chr16:80597800-80598400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr16:80597800-80598400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr16:80597800-80598800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr16:80597800-80599000	Enhancers	Primary T cells from cord blood	blood
8	chr16:80597800-80599000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr16:80597800-80599000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr16:80597800-80599200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr16:80597800-80599200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr16:80597800-80599200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr16:80597800-80599200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr16:80597800-80599400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr16:80598000-80598800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr16:80598000-80599000	Enhancers	Thymus	Thymus
17	chr16:80598200-80598400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr16:80598200-80598400	Enhancers	Small Intestine	intestine
19	chr16:80598200-80599000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr16:80598200-80599000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr16:80598200-80599000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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