Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr16:80607281-80608387	U2OS	brain:	n/a	n/a
2	KAP1	chr16:80607265-80608572	HEK293	kidney:	n/a	n/a
3	TCF7L2	chr16:80607577-80608059	HEK293	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80573192..80575392-chr16:80605742..80608359,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11644889	0.82[AMR][1000 genomes]
rs11649558	0.82[AMR][1000 genomes]
rs11866835	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12445526	0.88[EUR][1000 genomes]
rs13330766	0.88[EUR][1000 genomes]
rs4302045	0.82[AMR][1000 genomes]
rs4334316	0.82[AMR][1000 genomes]
rs4534859	0.82[EUR][1000 genomes]
rs4889162	0.90[EUR][1000 genomes]
rs59416398	0.82[AMR][1000 genomes]
rs60897798	0.88[EUR][1000 genomes]
rs6564765	0.88[EUR][1000 genomes]
rs7186068	0.89[EUR][1000 genomes]
rs7194176	0.89[EUR][1000 genomes]
rs7199198	0.89[EUR][1000 genomes]
rs7199965	0.90[EUR][1000 genomes]
rs7204803	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7205206	0.89[EUR][1000 genomes]
rs8049444	0.90[EUR][1000 genomes]
rs8063211	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs966669	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs966671	0.90[CEU][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9930879	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9935465	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80605200-80608200	Enhancers	Placenta	Placenta
2	chr16:80605400-80611200	Weak transcription	Gastric	stomach
3	chr16:80607800-80608200	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:80607800-80608200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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