Variant report

Variant	rs60897798
Chromosome Location	chr16:80612217-80612218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11866835	0.94[EUR][1000 genomes]
rs12445526	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13330766	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335321	0.82[EUR][1000 genomes]
rs4534859	0.90[EUR][1000 genomes]
rs4889162	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6564765	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7186068	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7194176	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7199198	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7199965	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7204803	0.92[EUR][1000 genomes]
rs7205206	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8049444	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8063211	0.89[EUR][1000 genomes]
rs9930879	0.84[EUR][1000 genomes]
rs9935465	0.87[EUR][1000 genomes]
rs9937215	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv3356733	chr16:80608151-80612849	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80611200-80612400	Enhancers	Liver	Liver
2	chr16:80611200-80612400	Enhancers	Duodenum Mucosa	Duodenum
3	chr16:80611200-80612400	Enhancers	Fetal Intestine Small	intestine
4	chr16:80611200-80612400	Enhancers	Pancreas	Pancrea
5	chr16:80611600-80614000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr16:80611800-80614000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr16:80611800-80614200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr16:80611800-80615800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr16:80612000-80612600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr16:80612000-80614200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr16:80612000-80616200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr16:80612200-80614000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr16:80612200-80614200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr16:80612200-80615800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr16:80612200-80616000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr16:80612200-80618600	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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