Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80611783..80614483-chr16:80638883..80641243,2	MCF-7	breast:
2	chr16:80598399..80600334-chr16:80611108..80613463,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11649558	0.85[TSI][hapmap]
rs12445526	0.94[EUR][1000 genomes]
rs13330766	0.94[EUR][1000 genomes]
rs4243204	0.90[TSI][hapmap]
rs4534859	0.81[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs4889162	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs60897798	0.94[EUR][1000 genomes]
rs6564765	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs7186068	0.92[EUR][1000 genomes]
rs7194176	0.92[EUR][1000 genomes]
rs7199198	0.92[EUR][1000 genomes]
rs7199965	0.93[EUR][1000 genomes]
rs7204803	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7205206	0.92[EUR][1000 genomes]
rs8049444	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs8063211	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs966669	0.93[AMR][1000 genomes]
rs966671	0.90[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9930879	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9935465	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs9937215	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv3356733	chr16:80608151-80612849	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11866835	TERF2IP	cis	parietal	SCAN
rs11866835	MON1B	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80611200-80612400	Enhancers	Liver	Liver
2	chr16:80611200-80612400	Enhancers	Duodenum Mucosa	Duodenum
3	chr16:80611200-80612400	Enhancers	Fetal Intestine Small	intestine
4	chr16:80611200-80612400	Enhancers	Pancreas	Pancrea
5	chr16:80611600-80612200	Enhancers	Small Intestine	intestine
6	chr16:80611600-80614000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr16:80611800-80614000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr16:80611800-80614200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr16:80611800-80615800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr16:80612000-80612600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr16:80612000-80614200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr16:80612000-80616200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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