Variant report

Variant	rs9935465
Chromosome Location	chr16:80604887-80604888
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80598414..80600726-chr16:80604095..80606613,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10871389	0.87[YRI][hapmap]
rs10871390	0.87[YRI][hapmap]
rs11150295	0.87[YRI][hapmap]
rs11866835	0.81[EUR][1000 genomes]
rs12443848	0.89[CHB][hapmap];0.87[YRI][hapmap]
rs12444563	0.89[CHB][hapmap]
rs12445526	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12448344	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs12597602	0.85[YRI][hapmap]
rs12600027	0.81[CEU][hapmap];0.88[CHB][hapmap];0.87[YRI][hapmap]
rs13330766	0.87[EUR][1000 genomes]
rs13335321	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4316772	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4352063	0.87[YRI][hapmap]
rs4392092	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs4427819	0.84[YRI][hapmap]
rs4458005	0.87[YRI][hapmap]
rs4533296	0.87[YRI][hapmap]
rs4534859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4889162	0.95[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60897798	0.87[EUR][1000 genomes]
rs6564762	0.87[YRI][hapmap]
rs6564763	0.87[YRI][hapmap]
rs6564765	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7186068	0.89[EUR][1000 genomes]
rs7190759	0.87[YRI][hapmap]
rs7194176	0.89[EUR][1000 genomes]
rs7199198	0.89[EUR][1000 genomes]
rs7199965	0.88[EUR][1000 genomes]
rs7204803	0.82[EUR][1000 genomes]
rs7205206	0.89[EUR][1000 genomes]
rs8049444	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs966669	0.82[EUR][1000 genomes]
rs966670	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs966671	0.84[EUR][1000 genomes]
rs9930879	0.90[EUR][1000 genomes]
rs9937215	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv3327294	chr16:80603476-80606024	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3323801	chr16:80603726-80605849	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3338451	chr16:80604151-80605449	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80599000-80607800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:80603800-80606000	Weak transcription	Spleen	Spleen
3	chr16:80604400-80605200	Weak transcription	Gastric	stomach

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