Variant report

Variant	rs4280255
Chromosome Location	chr16:80572587-80572588
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10871389	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10871390	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11150295	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11649558	0.81[CEU][hapmap]
rs11863816	0.85[EUR][1000 genomes]
rs11866588	0.85[EUR][1000 genomes]
rs11866734	0.85[EUR][1000 genomes]
rs11866994	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12051207	0.80[EUR][1000 genomes]
rs12443848	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12444563	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12445674	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12597089	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12597602	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12598311	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12600027	0.80[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12920691	0.93[ASN][1000 genomes]
rs12933306	0.93[ASN][1000 genomes]
rs12934612	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28448585	0.85[EUR][1000 genomes]
rs28531767	0.82[EUR][1000 genomes]
rs28542735	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28558345	0.89[ASN][1000 genomes]
rs28583998	0.84[EUR][1000 genomes]
rs28589320	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28657821	0.86[EUR][1000 genomes]
rs28759267	0.86[EUR][1000 genomes]
rs4352063	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4392091	0.87[ASN][1000 genomes]
rs4427819	0.95[CEU][hapmap]
rs4458005	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4517810	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs4530157	0.89[ASN][1000 genomes]
rs4533296	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4541087	0.91[EUR][1000 genomes]
rs4567728	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4622526	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4889156	0.83[ASN][1000 genomes]
rs4889160	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6564762	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6564763	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6564764	0.89[ASN][1000 genomes]
rs7185063	0.91[ASN][1000 genomes]
rs7187807	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs7189457	0.82[ASN][1000 genomes]
rs7190759	0.95[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7192862	0.93[ASN][1000 genomes]
rs7196394	0.88[ASN][1000 genomes]
rs7197982	0.89[ASN][1000 genomes]
rs8044239	0.81[ASN][1000 genomes]
rs8045496	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs8053848	0.82[ASN][1000 genomes]
rs8182107	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9806865	0.93[ASN][1000 genomes]
rs9806870	0.83[ASN][1000 genomes]
rs9931700	0.86[EUR][1000 genomes]
rs9932143	0.80[CEU][hapmap];0.86[EUR][1000 genomes]
rs9933884	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs9937217	0.84[EUR][1000 genomes]
rs9937836	0.89[ASN][1000 genomes]
rs9939509	0.89[ASN][1000 genomes]
rs9972747	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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