Variant report

Variant	rs9806870
Chromosome Location	chr16:80561883-80561884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80561442..80564402-chr16:80573429..80575868,3	MCF-7	breast:
2	chr16:80560536..80561900-chr16:80858338..80859410,14	MCF-7	breast:
3	chr16:80560059..80562846-chr16:80837762..80839641,2	MCF-7	breast:
4	chr16:80559100..80562719-chr16:80573545..80577468,3	MCF-7	breast:
5	chr16:80559326..80561966-chr16:80751074..80753973,2	MCF-7	breast:
6	chr16:80560152..80563115-chr16:80649804..80651965,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166446	Chromatin interaction
ENSG00000259867	Chromatin interaction
ENSG00000168589	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs28558345	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4392091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4392092	0.85[AMR][1000 genomes]
rs4530157	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4558433	0.80[AMR][1000 genomes]
rs4577099	0.82[AMR][1000 genomes]
rs4889156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4996292	0.85[AMR][1000 genomes]
rs6564764	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7185063	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7189457	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7190501	0.82[AMR][1000 genomes]
rs7192862	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7196394	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7197982	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8044239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8048886	0.82[AMR][1000 genomes]
rs8053848	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8059886	0.82[AMR][1000 genomes]
rs9806865	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9806915	0.82[AMR][1000 genomes]
rs9806977	0.82[AMR][1000 genomes]
rs9928594	0.82[AMR][1000 genomes]
rs9935535	0.82[AMR][1000 genomes]
rs9937836	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9938023	0.82[AMR][1000 genomes]
rs9939509	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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