Variant report

Variant	rs4392091
Chromosome Location	chr16:80561703-80561704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:80560034..80561852-chr16:80885706..80886850,17	MCF-7	breast:
2	chr16:80561442..80564402-chr16:80573429..80575868,3	MCF-7	breast:
3	chr16:80560536..80561900-chr16:80858338..80859410,14	MCF-7	breast:
4	chr16:80560979..80561850-chr16:80982503..80983251,4	MCF-7	breast:
5	chr16:80559928..80561785-chr16:80653051..80655923,2	MCF-7	breast:
6	chr16:80560059..80562846-chr16:80837762..80839641,2	MCF-7	breast:
7	chr16:80559100..80562719-chr16:80573545..80577468,3	MCF-7	breast:
8	chr16:80559326..80561966-chr16:80751074..80753973,2	MCF-7	breast:
9	chr16:80560152..80563115-chr16:80649804..80651965,3	MCF-7	breast:
10	chr16:80561006..80561873-chr16:80858356..80858913,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168589	Chromatin interaction
ENSG00000259867	Chromatin interaction
ENSG00000166446	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10871389	0.93[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs10871390	0.93[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11150295	0.93[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs11866994	0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs12597602	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12598311	0.81[ASN][1000 genomes]
rs12920691	0.81[ASN][1000 genomes]
rs12933306	0.81[ASN][1000 genomes]
rs12934612	0.91[CHB][hapmap]
rs28558345	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4352063	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs4392092	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs4427819	0.93[CHB][hapmap];0.88[JPT][hapmap]
rs4458005	0.93[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4530157	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4533296	0.93[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4558433	0.80[AMR][1000 genomes]
rs4567728	0.82[ASN][1000 genomes]
rs4577099	1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs4889156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4889160	0.93[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4996292	0.85[AMR][1000 genomes]
rs6564762	0.93[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap]
rs6564763	0.93[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs6564764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7185063	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7189457	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7190501	0.82[AMR][1000 genomes]
rs7190759	0.93[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap]
rs7192862	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7196394	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7197982	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8044239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8048886	0.82[AMR][1000 genomes]
rs8053848	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8059886	0.82[AMR][1000 genomes]
rs8182107	0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs9806865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9806870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9806915	0.82[AMR][1000 genomes]
rs9806977	0.82[AMR][1000 genomes]
rs9928594	0.82[AMR][1000 genomes]
rs9935535	0.82[AMR][1000 genomes]
rs9937836	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9938023	0.93[CHB][hapmap];0.82[AMR][1000 genomes]
rs9939509	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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