Variant report
| Variant | rs8053848 |
|---|---|
| Chromosome Location | chr16:80561441-80561442 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:10)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:10 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:80560034..80561852-chr16:80885706..80886850,17 | MCF-7 | breast: | |
| 2 | chr16:80560536..80561900-chr16:80858338..80859410,14 | MCF-7 | breast: | |
| 3 | chr16:80560979..80561850-chr16:80982503..80983251,4 | MCF-7 | breast: | |
| 4 | chr16:80559928..80561785-chr16:80653051..80655923,2 | MCF-7 | breast: | |
| 5 | chr16:80560059..80562846-chr16:80837762..80839641,2 | MCF-7 | breast: | |
| 6 | chr16:80559100..80562719-chr16:80573545..80577468,3 | MCF-7 | breast: | |
| 7 | chr16:80560938..80561634-chr16:80858570..80859215,4 | MCF-7 | breast: | |
| 8 | chr16:80559326..80561966-chr16:80751074..80753973,2 | MCF-7 | breast: | |
| 9 | chr16:80560152..80563115-chr16:80649804..80651965,3 | MCF-7 | breast: | |
| 10 | chr16:80561006..80561873-chr16:80858356..80858913,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000259867 | Chromatin interaction |
| ENSG00000166446 | Chromatin interaction |
| ENSG00000168589 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs28558345 | 0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4392091 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4392092 | 0.85[AMR][1000 genomes] |
| rs4470162 | 0.83[AFR][1000 genomes] |
| rs4530157 | 0.81[ASN][1000 genomes] |
| rs4558433 | 0.80[AMR][1000 genomes] |
| rs4577099 | 0.82[AMR][1000 genomes] |
| rs4889156 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4996292 | 0.85[AMR][1000 genomes] |
| rs6564764 | 0.81[ASN][1000 genomes] |
| rs7185063 | 0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7189457 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7190501 | 0.82[AMR][1000 genomes] |
| rs7192862 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7196394 | 0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7197982 | 0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs8044239 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8048886 | 0.82[AMR][1000 genomes] |
| rs8059886 | 0.82[AMR][1000 genomes] |
| rs9806865 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9806870 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9806915 | 0.82[AMR][1000 genomes] |
| rs9806977 | 0.82[AMR][1000 genomes] |
| rs9928594 | 0.82[AMR][1000 genomes] |
| rs9935535 | 0.82[AMR][1000 genomes] |
| rs9937836 | 0.81[ASN][1000 genomes] |
| rs9938023 | 0.82[AMR][1000 genomes] |
| rs9939509 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv907001 | chr16:80405292-80620611 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv833300 | chr16:80475066-80601036 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1060621 | chr16:80532848-80980616 | Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 4 | nsv542989 | chr16:80532848-80980616 | Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80561400-80561600 | Enhancers | Placenta | Placenta |
