Variant report

Variant	rs4889156
Chromosome Location	chr16:80560058-80560059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80560034..80561852-chr16:80885706..80886850,17	MCF-7	breast:
2	chr16:79103992..79106685-chr16:80558590..80561152,2	K562	blood:
3	chr16:80559928..80561785-chr16:80653051..80655923,2	MCF-7	breast:
4	chr16:80559100..80562719-chr16:80573545..80577468,3	MCF-7	breast:
5	chr16:80559326..80561966-chr16:80751074..80753973,2	MCF-7	breast:
6	chr16:80467020..80469434-chr16:80558552..80560756,2	K562	blood:
7	chr16:79801648..79802560-chr16:80560057..80560606,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168589	Chromatin interaction
ENSG00000259867	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs28558345	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4392091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4392092	0.85[AMR][1000 genomes]
rs4470162	0.83[AFR][1000 genomes]
rs4530157	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4558433	0.80[AMR][1000 genomes]
rs4577099	0.82[AMR][1000 genomes]
rs4996292	0.85[AMR][1000 genomes]
rs6564764	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7185063	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7189457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7190501	0.82[AMR][1000 genomes]
rs7192862	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7196394	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7197982	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8044239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8048886	0.82[AMR][1000 genomes]
rs8053848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8059886	0.82[AMR][1000 genomes]
rs9806865	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9806870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9806915	0.82[AMR][1000 genomes]
rs9806977	0.82[AMR][1000 genomes]
rs9928594	0.82[AMR][1000 genomes]
rs9935535	0.82[AMR][1000 genomes]
rs9937836	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9938023	0.82[AMR][1000 genomes]
rs9939509	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80558800-80561000	Enhancers	Fetal Kidney	kidney
2	chr16:80560000-80560200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr16:80560000-80560400	Flanking Active TSS	Liver	Liver
4	chr16:80560000-80560600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links