Variant report

Variant	rs16953757
Chromosome Location	chr15:33534324-33534325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12902782	1.00[ASN][1000 genomes]
rs12903983	1.00[ASN][1000 genomes]
rs12907653	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12908986	1.00[ASN][1000 genomes]
rs12910336	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28545416	1.00[ASN][1000 genomes]
rs28643381	1.00[ASN][1000 genomes]
rs34410148	1.00[ASN][1000 genomes]
rs35414549	1.00[ASN][1000 genomes]
rs35877923	1.00[ASN][1000 genomes]
rs4780093	1.00[ASN][1000 genomes]
rs71462847	1.00[ASN][1000 genomes]
rs71462849	1.00[ASN][1000 genomes]
rs7179886	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16953757	ARHGAP11B	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33528000-33534800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:33533400-33537400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:33533600-33534800	Enhancers	HMEC	breast
4	chr15:33533600-33535200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr15:33533600-33535400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr15:33533600-33535400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:33533600-33535400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:33533600-33537000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:33533600-33537000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:33533600-33537000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:33533600-33538200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr15:33533600-33539000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:33533800-33534600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr15:33533800-33535000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr15:33533800-33536200	Enhancers	A549	lung
16	chr15:33533800-33536600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:33534000-33534800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:33534000-33535000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr15:33534000-33535000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:33534000-33535000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:33534000-33535000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:33534000-33535000	Enhancers	Fetal Kidney	kidney
23	chr15:33534000-33535200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr15:33534000-33535200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr15:33534000-33535200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr15:33534000-33536400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:33534000-33536600	Enhancers	Osteobl	bone
28	chr15:33534200-33534400	Flanking Active TSS	NH-A	brain
29	chr15:33534200-33535000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:33534200-33535000	Enhancers	H9 Cell Line	embryonic stem cell
31	chr15:33534200-33535200	Flanking Active TSS	NHEK	skin
32	chr15:33534200-33535400	Enhancers	Fetal Thymus	thymus
33	chr15:33534200-33535400	Enhancers	NHDF-Ad	bronchial
34	chr15:33534200-33536000	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr15:33534200-33536600	Enhancers	Muscle Satellite Cultured Cells	--
36	chr15:33534200-33537800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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