Variant report

Variant	rs28545416
Chromosome Location	chr15:33589617-33589618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12903983	1.00[ASN][1000 genomes]
rs12908986	1.00[ASN][1000 genomes]
rs12910336	1.00[ASN][1000 genomes]
rs16953757	1.00[ASN][1000 genomes]
rs28643381	1.00[ASN][1000 genomes]
rs34410148	1.00[ASN][1000 genomes]
rs35414549	1.00[ASN][1000 genomes]
rs35877923	1.00[ASN][1000 genomes]
rs4780093	1.00[ASN][1000 genomes]
rs71462849	1.00[ASN][1000 genomes]
rs7179886	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33586600-33590000	Weak transcription	Pancreas	Pancrea
2	chr15:33586800-33590800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:33588400-33590400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:33588400-33591000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:33588400-33591200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:33588400-33591600	Enhancers	NHEK	skin
7	chr15:33588400-33591800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:33588400-33591800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:33588400-33593400	Enhancers	HMEC	breast
10	chr15:33589400-33590000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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