Variant report

Variant	rs16954252
Chromosome Location	chr13:98300817-98300818
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16954214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16954221	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16954230	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16954239	1.00[EUR][1000 genomes]
rs16954245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73550064	1.00[EUR][1000 genomes]
rs73552096	1.00[EUR][1000 genomes]
rs7998899	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98294400-98303000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr13:98299800-98302600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:98300000-98303400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr13:98300400-98301000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:98300400-98301800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:98300400-98302000	Enhancers	NHEK	skin
7	chr13:98300600-98301200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr13:98300600-98301400	Flanking Active TSS	HUVEC	blood vessel
9	chr13:98300600-98302000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:98300600-98302600	Enhancers	HMEC	breast
11	chr13:98300600-98303400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr13:98300600-98305400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:98300800-98301400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr13:98300800-98301600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links