Variant report

Variant	rs7998899
Chromosome Location	chr13:98310303-98310304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16954214	1.00[EUR][1000 genomes]
rs16954221	1.00[EUR][1000 genomes]
rs16954230	1.00[EUR][1000 genomes]
rs16954239	1.00[EUR][1000 genomes]
rs16954245	1.00[EUR][1000 genomes]
rs16954252	1.00[EUR][1000 genomes]
rs73550064	1.00[EUR][1000 genomes]
rs73552096	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98303600-98315800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:98304600-98310400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:98305800-98310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr13:98306400-98310600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:98308200-98314800	Enhancers	HUVEC	blood vessel
6	chr13:98310200-98310400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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