Variant report

Variant	rs16955361
Chromosome Location	chr16:81485354-81485355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81484666..81489373-chr16:81491892..81496112,4	MCF-7	breast:
2	chr16:81484368..81486187-chr16:81489220..81491535,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10438612	1.00[AMR][1000 genomes]
rs6564883	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs8062519	0.82[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81480600-81486400	Enhancers	Small Intestine	intestine
2	chr16:81480600-81487200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr16:81480600-81487600	Transcr. at gene 5' and 3'	A549	lung
4	chr16:81480800-81485600	Weak transcription	Right Ventricle	heart
5	chr16:81480800-81487600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr16:81481200-81485400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr16:81481200-81487400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr16:81481400-81491200	Weak transcription	NHLF	lung
9	chr16:81481400-81496400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr16:81481600-81486400	Enhancers	Primary hematopoietic stem cells	blood
11	chr16:81481600-81486800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr16:81481800-81487400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr16:81482000-81507000	Weak transcription	Fetal Heart	heart
14	chr16:81482200-81485400	Weak transcription	Ovary	ovary
15	chr16:81482200-81485400	Weak transcription	Hela-S3	cervix
16	chr16:81482200-81487600	Enhancers	Stomach Mucosa	stomach
17	chr16:81482400-81487200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:81482600-81485400	Enhancers	Esophagus	oesophagus
19	chr16:81482600-81485400	Weak transcription	NH-A	brain
20	chr16:81482600-81486000	Weak transcription	Colon Smooth Muscle	Colon
21	chr16:81482600-81487200	Enhancers	Colonic Mucosa	Colon
22	chr16:81482600-81490800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr16:81482800-81485600	Weak transcription	Brain Substantia Nigra	brain
24	chr16:81482800-81486200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr16:81482800-81486600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:81482800-81489000	Enhancers	Fetal Intestine Large	intestine
27	chr16:81482800-81490000	Enhancers	Liver	Liver
28	chr16:81482800-81494400	Genic enhancers	Fetal Intestine Small	intestine
29	chr16:81483000-81485800	Genic enhancers	NHEK	skin
30	chr16:81483000-81486400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr16:81483200-81489800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr16:81483400-81487600	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr16:81483600-81485400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr16:81483600-81486400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr16:81483800-81485400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr16:81483800-81485600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr16:81483800-81486600	Weak transcription	Fetal Brain Male	brain
38	chr16:81484000-81485400	Weak transcription	Gastric	stomach
39	chr16:81484000-81485600	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr16:81484000-81485600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr16:81484000-81487400	Enhancers	Primary B cells from peripheral blood	blood
42	chr16:81484200-81487600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr16:81484400-81485400	Strong transcription	Stomach Smooth Muscle	stomach
44	chr16:81484400-81485800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr16:81484400-81487200	Genic enhancers	Dnd41	blood
46	chr16:81484400-81487400	Enhancers	Fetal Thymus	thymus
47	chr16:81484600-81485600	Enhancers	Primary B cells from cord blood	blood
48	chr16:81484600-81485800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr16:81484600-81488400	Enhancers	Adipose Nuclei	Adipose
50	chr16:81484600-81489400	Enhancers	Spleen	Spleen

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