Variant report

Variant	rs6564883
Chromosome Location	chr16:81493478-81493479
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81489735..81495358-chr16:81495824..81502529,7	MCF-7	breast:
2	chr16:81480171..81484417-chr16:81492553..81495426,4	MCF-7	breast:
3	chr16:81478464..81481334-chr16:81489889..81494199,4	MCF-7	breast:
4	chr16:81493353..81497487-chr16:81505659..81509589,4	MCF-7	breast:
5	chr16:81484666..81489373-chr16:81491892..81496112,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10438612	1.00[AMR][1000 genomes]
rs16955361	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs8062519	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv907010	chr16:81488893-81534790	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81481400-81496400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr16:81482000-81507000	Weak transcription	Fetal Heart	heart
3	chr16:81482800-81494400	Genic enhancers	Fetal Intestine Small	intestine
4	chr16:81485400-81497000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr16:81485600-81516800	Weak transcription	Hela-S3	cervix
6	chr16:81486000-81500200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr16:81486400-81501800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr16:81486600-81495800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr16:81486600-81502600	Weak transcription	Fetal Kidney	kidney
10	chr16:81486600-81525200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr16:81486800-81493600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr16:81487000-81495200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr16:81487000-81500000	Weak transcription	Fetal Lung	lung
14	chr16:81487000-81504400	Weak transcription	Fetal Brain Male	brain
15	chr16:81487000-81507200	Weak transcription	Colon Smooth Muscle	Colon
16	chr16:81487200-81496000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr16:81488400-81494000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr16:81488600-81494800	Genic enhancers	Esophagus	oesophagus
19	chr16:81488800-81494000	Strong transcription	Thymus	Thymus
20	chr16:81489000-81493800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr16:81489000-81499200	Strong transcription	Dnd41	blood
22	chr16:81489200-81494600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr16:81489200-81495000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr16:81489400-81493600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr16:81489400-81493800	Strong transcription	Primary T cells from cord blood	blood
26	chr16:81489600-81493800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr16:81490000-81495000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr16:81490200-81495400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr16:81490600-81496600	Enhancers	Liver	Liver
30	chr16:81490600-81509800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr16:81490800-81493800	Genic enhancers	Spleen	Spleen
32	chr16:81490800-81498800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr16:81490800-81499400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr16:81491000-81494000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr16:81491000-81494400	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr16:81491000-81494800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr16:81491000-81500000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr16:81491200-81498800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr16:81491600-81494200	Weak transcription	Brain Substantia Nigra	brain
40	chr16:81491600-81495200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr16:81491600-81496400	Weak transcription	NHLF	lung
42	chr16:81491600-81500000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr16:81491600-81503400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr16:81491800-81493600	Genic enhancers	K562	blood
45	chr16:81491800-81493800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr16:81491800-81494800	Strong transcription	NHEK	skin
47	chr16:81491800-81498000	Weak transcription	Aorta	Aorta
48	chr16:81491800-81498000	Strong transcription	Fetal Stomach	stomach
49	chr16:81491800-81499600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr16:81492000-81493600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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