Variant report

Variant	rs16955417
Chromosome Location	chr16:81508633-81508634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81506233..81509171-chr16:81529935..81531469,2	MCF-7	breast:
2	chr16:81480768..81483026-chr16:81506735..81508794,2	MCF-7	breast:
3	chr16:81493353..81497487-chr16:81505659..81509589,4	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12596103	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12596138	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs12596605	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[AMR][1000 genomes]
rs12599606	1.00[AMR][1000 genomes]
rs12599890	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs13330589	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13333580	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16955379	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2306115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28634254	1.00[AMR][1000 genomes]
rs3803656	1.00[CEU][hapmap];0.80[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs60898915	1.00[AMR][1000 genomes]
rs9928008	1.00[CEU][hapmap]
rs9932863	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv907010	chr16:81488893-81534790	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv978171	chr16:81508429-81510591	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81485600-81516800	Weak transcription	Hela-S3	cervix
2	chr16:81486600-81525200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:81490600-81509800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr16:81492200-81512200	Genic enhancers	A549	lung
5	chr16:81496800-81514400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr16:81497600-81514600	Weak transcription	HSMM	muscle
7	chr16:81501800-81514400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:81501800-81515200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:81503000-81516600	Weak transcription	Brain Germinal Matrix	brain
10	chr16:81503800-81511200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr16:81504000-81509800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr16:81504000-81511600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr16:81504000-81517800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr16:81504200-81513400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr16:81504200-81518200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr16:81504400-81508800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr16:81504400-81508800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr16:81504400-81514600	Strong transcription	NHEK	skin
19	chr16:81505200-81511800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr16:81505200-81525600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:81505400-81521800	Weak transcription	Fetal Kidney	kidney
22	chr16:81505600-81512800	Strong transcription	Dnd41	blood
23	chr16:81505800-81514200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr16:81505800-81515000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr16:81505800-81523600	Weak transcription	Fetal Brain Male	brain
26	chr16:81506000-81509400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr16:81506000-81546600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr16:81506200-81510200	Weak transcription	GM12878-XiMat	blood
29	chr16:81506200-81510400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr16:81506200-81512000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr16:81506400-81508800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr16:81506400-81508800	Genic enhancers	Fetal Intestine Small	intestine
33	chr16:81506400-81509000	Enhancers	Fetal Lung	lung
34	chr16:81506400-81509000	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr16:81506400-81510400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr16:81506600-81508800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr16:81506600-81509000	Weak transcription	Fetal Brain Female	brain
38	chr16:81506600-81510000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr16:81506600-81510200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr16:81506600-81547000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr16:81506800-81510200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr16:81506800-81510400	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr16:81506800-81511000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr16:81506800-81511000	Enhancers	Primary B cells from cord blood	blood
45	chr16:81506800-81513600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr16:81506800-81517600	Weak transcription	HMEC	breast
47	chr16:81507000-81510400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr16:81507000-81511000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr16:81507000-81511600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:81507000-81512400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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