Variant report

Variant	rs60898915
Chromosome Location	chr16:81495221-81495222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81489735..81495358-chr16:81495824..81502529,7	MCF-7	breast:
2	chr16:81480171..81484417-chr16:81492553..81495426,4	MCF-7	breast:
3	chr16:81493353..81497487-chr16:81505659..81509589,4	MCF-7	breast:
4	chr16:81488699..81490361-chr16:81495076..81496755,2	MCF-7	breast:
5	chr16:81484666..81489373-chr16:81491892..81496112,4	MCF-7	breast:
6	chr16:81490358..81492408-chr16:81493886..81495406,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12596103	1.00[AMR][1000 genomes]
rs12596138	0.82[ASN][1000 genomes]
rs12596605	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12599606	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12599890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13333580	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16955379	1.00[AMR][1000 genomes]
rs16955417	1.00[AMR][1000 genomes]
rs2306115	1.00[AMR][1000 genomes]
rs28517479	0.81[ASN][1000 genomes]
rs28634254	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3803656	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	esv34108	chr16:81469090-81510471	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
5	nsv907010	chr16:81488893-81534790	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81481400-81496400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr16:81482000-81507000	Weak transcription	Fetal Heart	heart
3	chr16:81485400-81497000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr16:81485600-81516800	Weak transcription	Hela-S3	cervix
5	chr16:81486000-81500200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr16:81486400-81501800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr16:81486600-81495800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr16:81486600-81502600	Weak transcription	Fetal Kidney	kidney
9	chr16:81486600-81525200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr16:81487000-81500000	Weak transcription	Fetal Lung	lung
11	chr16:81487000-81504400	Weak transcription	Fetal Brain Male	brain
12	chr16:81487000-81507200	Weak transcription	Colon Smooth Muscle	Colon
13	chr16:81487200-81496000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr16:81489000-81499200	Strong transcription	Dnd41	blood
15	chr16:81490200-81495400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr16:81490600-81496600	Enhancers	Liver	Liver
17	chr16:81490600-81509800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr16:81490800-81498800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr16:81490800-81499400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr16:81491000-81500000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr16:81491200-81498800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr16:81491600-81496400	Weak transcription	NHLF	lung
23	chr16:81491600-81500000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr16:81491600-81503400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr16:81491800-81498000	Weak transcription	Aorta	Aorta
26	chr16:81491800-81498000	Strong transcription	Fetal Stomach	stomach
27	chr16:81491800-81499600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr16:81492000-81496000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr16:81492000-81496200	Weak transcription	HSMMtube	muscle
30	chr16:81492000-81496200	Weak transcription	Osteobl	bone
31	chr16:81492000-81496400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr16:81492000-81496400	Weak transcription	NHDF-Ad	bronchial
33	chr16:81492000-81498800	Genic enhancers	HepG2	liver
34	chr16:81492000-81499200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr16:81492200-81496000	Weak transcription	HSMM	muscle
36	chr16:81492200-81496400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr16:81492200-81496400	Weak transcription	Brain Anterior Caudate	brain
38	chr16:81492200-81500200	Weak transcription	Fetal Brain Female	brain
39	chr16:81492200-81502000	Weak transcription	Colonic Mucosa	Colon
40	chr16:81492200-81504400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr16:81492200-81504400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr16:81492200-81512200	Genic enhancers	A549	lung
43	chr16:81492400-81500000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:81492400-81500000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr16:81492400-81500600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr16:81492400-81503000	Weak transcription	NH-A	brain
47	chr16:81492400-81503400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr16:81492600-81496800	Enhancers	Stomach Mucosa	stomach
49	chr16:81492600-81506200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr16:81492800-81498400	Weak transcription	H1 Cell Line	embryonic stem cell

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