Variant report

Variant	rs16955651
Chromosome Location	chr15:29962039-29962040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:29961960..29963805-chr15:29967307..29968997,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11633466	0.94[EUR][1000 genomes]
rs4522365	0.83[ASW][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs8043376	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9745286	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv903747	chr15:29361126-30008977	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29957200-29966600	Weak transcription	Right Atrium	heart
2	chr15:29958000-29962400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:29958000-29962800	Weak transcription	Fetal Kidney	kidney
4	chr15:29958000-29963400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:29958000-29964600	Weak transcription	Fetal Lung	lung
6	chr15:29958000-29966600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr15:29958600-29963400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:29959200-29962800	Weak transcription	Fetal Brain Male	brain
9	chr15:29960000-29966000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:29960200-29962200	Weak transcription	Hela-S3	cervix
11	chr15:29960800-29962200	Weak transcription	Liver	Liver
12	chr15:29961600-29962400	Enhancers	HSMM	muscle
13	chr15:29961800-29962400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:29961800-29962800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:29961800-29962800	Enhancers	Osteobl	bone
16	chr15:29961800-29963200	Flanking Active TSS	A549	lung
17	chr15:29961800-29963400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr15:29961800-29963400	Enhancers	NH-A	brain
19	chr15:29961800-29963800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:29961800-29964000	Enhancers	NHEK	skin
21	chr15:29961800-29964200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:29961800-29964200	Enhancers	HSMMtube	muscle
23	chr15:29961800-29964200	Enhancers	NHDF-Ad	bronchial
24	chr15:29961800-29964600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:29961800-29965000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:29961800-29966000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:29962000-29962400	Enhancers	K562	blood
28	chr15:29962000-29962600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:29962000-29963000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:29962000-29964200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:29962000-29964200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr15:29962000-29964200	Enhancers	Pancreas	Pancrea
33	chr15:29962000-29964200	Enhancers	NHLF	lung
34	chr15:29962000-29964400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:29962000-29964800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:29962000-29965000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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