Variant report

Variant	rs16956026
Chromosome Location	chr16:81973398-81973399
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81923730..81925086-chr16:81972697..81973538,4	MCF-7	breast:
2	chr16:81972632..81975511-chr16:82029375..82034440,5	MCF-7	breast:
3	chr16:81973286..81973820-chr16:82030870..82031651,2	MCF-7	breast:
4	chr16:81973203..81974111-chr16:82263361..82264340,4	K562	blood:
5	chr16:81973095..81975241-chr16:81976233..81977759,2	K562	blood:
6	chr16:81923763..81924551-chr16:81972966..81973650,4	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13337293	1.00[MEX][hapmap]
rs13380433	1.00[EUR][1000 genomes]
rs7202665	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81920400-81982000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr16:81925800-81992600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:81933000-81983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:81936000-81982000	Weak transcription	Gastric	stomach
5	chr16:81936000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr16:81945000-81984600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr16:81946200-81985200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr16:81950600-81982000	Strong transcription	GM12878-XiMat	blood
9	chr16:81952000-81982800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr16:81952400-81983000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:81952600-81981800	Strong transcription	Primary B cells from cord blood	blood
12	chr16:81952800-81984600	Strong transcription	Liver	Liver
13	chr16:81953000-81977400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr16:81954800-81991800	Weak transcription	Fetal Thymus	thymus
15	chr16:81959600-81983800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr16:81960600-81982400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:81961600-81984600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr16:81962600-81995800	Weak transcription	Small Intestine	intestine
19	chr16:81962800-81983600	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr16:81963000-81982000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:81963000-81984600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr16:81963600-81979600	Weak transcription	Colonic Mucosa	Colon
23	chr16:81963600-81983200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr16:81967400-81984600	Weak transcription	Placenta	Placenta
25	chr16:81968200-81984200	Strong transcription	Primary hematopoietic stem cells	blood
26	chr16:81969200-81973600	Enhancers	Fetal Stomach	stomach
27	chr16:81969800-81973800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr16:81970200-81990800	Weak transcription	Pancreas	Pancrea
29	chr16:81970800-81973600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr16:81970800-81979800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr16:81970800-81991200	Weak transcription	Thymus	Thymus
32	chr16:81970800-81994600	Weak transcription	Fetal Intestine Large	intestine
33	chr16:81971000-81973400	Enhancers	Stomach Mucosa	stomach
34	chr16:81971200-81976400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr16:81971200-81976600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr16:81971200-81976800	Weak transcription	Colon Smooth Muscle	Colon
37	chr16:81971200-81977400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr16:81971400-81974000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr16:81971600-81984600	Weak transcription	Left Ventricle	heart
40	chr16:81971800-81974600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr16:81971800-81974600	Weak transcription	NHEK	skin
42	chr16:81971800-81976800	Strong transcription	Spleen	Spleen
43	chr16:81972200-81974200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr16:81972200-81993200	Weak transcription	Fetal Kidney	kidney
45	chr16:81972400-81973800	Enhancers	H1 Cell Line	embryonic stem cell
46	chr16:81972400-81977600	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr16:81972600-81973400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr16:81972600-81973400	Bivalent Enhancer	Fetal Muscle Leg	muscle
49	chr16:81972600-81973600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr16:81972600-81973800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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