Variant report

Variant	rs13337293
Chromosome Location	chr16:82077336-82077337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82076564..82079746-chr16:82084157..82087056,3	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11150434	1.00[EUR][1000 genomes]
rs11150435	1.00[EUR][1000 genomes]
rs16956026	1.00[MEX][hapmap]
rs16956238	1.00[EUR][1000 genomes]
rs16956244	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16956274	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16956406	1.00[TSI][hapmap]
rs4435247	1.00[TSI][hapmap]
rs4889446	1.00[TSI][hapmap]
rs60912325	1.00[EUR][1000 genomes]
rs7192075	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7195508	1.00[EUR][1000 genomes]
rs7196078	1.00[EUR][1000 genomes]
rs7203384	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7205968	1.00[EUR][1000 genomes]
rs8045494	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8046533	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8048090	1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs8049423	1.00[EUR][1000 genomes]
rs8049750	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8056343	1.00[EUR][1000 genomes]
rs8058561	1.00[EUR][1000 genomes]
rs8062348	1.00[TSI][hapmap]
rs8063275	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8191048	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs8191049	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8191050	1.00[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs8191068	0.80[AFR][1000 genomes]
rs8191080	1.00[EUR][1000 genomes]
rs8191081	1.00[EUR][1000 genomes]
rs8191089	1.00[EUR][1000 genomes]
rs8191167	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9926028	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9926211	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9941115	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	esv2029415	chr16:82076824-82077509	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3527587	chr16:82076892-82077421	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3527588	chr16:82076903-82077421	Enhancers Genic enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3313079	chr16:82076911-82077416	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3527583	chr16:82076921-82077349	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3313077	chr16:82076926-82077388	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3313078	chr16:82076934-82077390	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3313075	chr16:82076941-82077342	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3527585	chr16:82076942-82077407	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3527589	chr16:82076947-82077377	Enhancers Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82068800-82077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:82069200-82077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82070200-82083400	Weak transcription	Colonic Mucosa	Colon
4	chr16:82070800-82081200	Weak transcription	Pancreas	Pancrea
5	chr16:82071800-82077800	Weak transcription	Stomach Mucosa	stomach
6	chr16:82072800-82077800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:82072800-82077800	Enhancers	Liver	Liver
8	chr16:82072800-82077800	Weak transcription	Gastric	stomach
9	chr16:82072800-82077800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr16:82074200-82078400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr16:82074200-82085600	Enhancers	HepG2	liver
12	chr16:82074600-82078000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:82075200-82077800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:82075200-82082400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr16:82075600-82077400	Weak transcription	NHEK	skin
16	chr16:82075800-82078400	Enhancers	NHLF	lung
17	chr16:82076000-82077400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:82076000-82077400	Weak transcription	HMEC	breast
19	chr16:82076000-82078000	Weak transcription	Small Intestine	intestine
20	chr16:82076200-82078000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr16:82076400-82078600	Enhancers	NH-A	brain
22	chr16:82076400-82079800	Enhancers	Fetal Lung	lung
23	chr16:82076600-82077800	Enhancers	Duodenum Mucosa	Duodenum
24	chr16:82076600-82078400	Enhancers	HSMMtube	muscle
25	chr16:82076600-82078600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr16:82076600-82079000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr16:82076600-82079600	Enhancers	Fetal Stomach	stomach
28	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
29	chr16:82076800-82077800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr16:82077000-82079200	Weak transcription	Placenta	Placenta
31	chr16:82077000-82083800	Weak transcription	Lung	lung
32	chr16:82077200-82077600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:82077200-82077600	Weak transcription	NHDF-Ad	bronchial
34	chr16:82077200-82078600	Enhancers	Fetal Kidney	kidney
35	chr16:82077200-82079800	Enhancers	Fetal Intestine Small	intestine

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