Variant report

Variant	rs16956274
Chromosome Location	chr16:82073276-82073277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11859929	0.80[YRI][hapmap]
rs11861598	1.00[ASW][hapmap];0.80[YRI][hapmap]
rs13330804	1.00[EUR][1000 genomes]
rs13336862	0.80[YRI][hapmap]
rs13337293	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16956244	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs16956406	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4395069	1.00[EUR][1000 genomes]
rs4435247	1.00[TSI][hapmap]
rs4485363	1.00[EUR][1000 genomes]
rs4520828	1.00[EUR][1000 genomes]
rs4889446	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs61239952	1.00[EUR][1000 genomes]
rs61654022	1.00[EUR][1000 genomes]
rs7190253	1.00[EUR][1000 genomes]
rs7192075	1.00[EUR][1000 genomes]
rs7203384	1.00[EUR][1000 genomes]
rs72547419	1.00[EUR][1000 genomes]
rs73598737	1.00[EUR][1000 genomes]
rs74029313	1.00[EUR][1000 genomes]
rs8045494	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8046533	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8048090	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8049750	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8052451	1.00[EUR][1000 genomes]
rs8059606	1.00[EUR][1000 genomes]
rs8062348	1.00[TSI][hapmap]
rs8063275	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8191048	1.00[GIH][hapmap]
rs8191049	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs8191050	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8191167	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9926028	0.84[ASW][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs9926211	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9926471	0.80[YRI][hapmap]
rs9926701	1.00[ASW][hapmap];0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82067400-82077000	Weak transcription	Right Atrium	heart
2	chr16:82068800-82077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:82069200-82074000	Weak transcription	Fetal Lung	lung
4	chr16:82069200-82076600	Weak transcription	HSMMtube	muscle
5	chr16:82069200-82077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr16:82069400-82075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:82070200-82083400	Weak transcription	Colonic Mucosa	Colon
8	chr16:82070800-82074200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr16:82070800-82074800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr16:82070800-82081200	Weak transcription	Pancreas	Pancrea
11	chr16:82071800-82073400	Enhancers	Fetal Stomach	stomach
12	chr16:82071800-82077800	Weak transcription	Stomach Mucosa	stomach
13	chr16:82072600-82073400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr16:82072800-82074800	Weak transcription	Fetal Intestine Small	intestine
15	chr16:82072800-82075000	Weak transcription	Fetal Intestine Large	intestine
16	chr16:82072800-82077800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr16:82072800-82077800	Enhancers	Liver	Liver
18	chr16:82072800-82077800	Weak transcription	Gastric	stomach
19	chr16:82072800-82077800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr16:82073000-82073400	Weak transcription	Placenta	Placenta
21	chr16:82073000-82073800	Genic enhancers	Duodenum Mucosa	Duodenum
22	chr16:82073000-82076600	Weak transcription	Fetal Kidney	kidney
23	chr16:82073200-82073400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr16:82073200-82074200	Weak transcription	HepG2	liver

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